MLOC_25805 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains97.6549125.189124.867113.901
LEAShoots from the seedlings (10 cm shoot stage)159.993234.282206.73165.604
INF1Young developing inflorescences (5mm)64.838175.442186.885860.9153
INF2Developing inflorescences (1-1.5 cm)132.521109.55692.5907121.826
ROORoots from the seedlings (10 cm shoot stage)450.145264.854253.17344.09
NODDeveloping tillers at six leaf stage, 3rd internode111.219227.689187.257742.199
CAR5Developing grain, bracts removed (5 DPA)330.177331.245304.343295.207
CAR15Developing grain, bracts removed (15 DPA)44.447838.947348.228696.0966



CDS Structure of MLOC_25805






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25805.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_25805.1CUST_3735_PI427708083AvailableAvailablecontig_171434 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49200.2 -3 1e-40 142 70/84 (83%) 13105.m05261 protein aspartic proteinase oryzasin-1 precursor, putative, expressed
TAIR PP10 AT1G11910.1 -3 4e-37 131 64/85 (75%) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506