MLOC_25762 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains29.253355.172144.996226.3339
LEAShoots from the seedlings (10 cm shoot stage)51.751446.475834.09524.3408
INF1Young developing inflorescences (5mm)35.529730.337428.027915.6378
INF2Developing inflorescences (1-1.5 cm)15.06217.531517.217111.5843
ROORoots from the seedlings (10 cm shoot stage)23.633750.094146.0730.7025
NODDeveloping tillers at six leaf stage, 3rd internode53.62924.855627.611858.1261
CAR5Developing grain, bracts removed (5 DPA)34.788737.657937.466321.2429
CAR15Developing grain, bracts removed (15 DPA)11.55589.8572511.921714.4358



CDS Structure of MLOC_25762






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25762.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_25762.1CUST_11845_PI427708083AvailableAvailablecontig_1712260 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g16040.1 +2 1e-60 206 109/135 (81%) 13107.m01679 protein erythronate-4-phosphate dehydrogenase domain containing protein, expressed
TAIR PP10 AT1G72190.1 +2 9e-38 142 76/120 (63%) D-isomer specific 2-hydroxyacid dehydrogenase family protein | chr1:27167458-27169696 REVERSE LENGTH=373