MLOC_25717 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.70067900.1430940.378013
LEAShoots from the seedlings (10 cm shoot stage)00.36252100.588596
INF1Young developing inflorescences (5mm)0.09026360.0978220.1137130.0909953
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0.8665940.7637680.03067222.06231
CAR5Developing grain, bracts removed (5 DPA)0.1004750.092670800.1076
CAR15Developing grain, bracts removed (15 DPA)0000.132389



CDS Structure of MLOC_25717






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25717.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_25717.1CUST_3721_PI427708083AvailableAvailablecontig_170812 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g08260.4 +2 4e-45 157 77/115 (67%) 13112.m00872 protein dehydrogenase E1 component domain containing protein, expressed
TAIR PP10 AT1G21400.1 +2 3e-24 99 48/110 (44%) Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr1:7493492-7496240 FORWARD LENGTH=472