MLOC_25628 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.140546.18426.787186.05661
LEAShoots from the seedlings (10 cm shoot stage)3.717791.809471.086091.96531
INF1Young developing inflorescences (5mm)4.587915.372944.298234.77038
INF2Developing inflorescences (1-1.5 cm)6.517685.451545.322297.37288
ROORoots from the seedlings (10 cm shoot stage)1.296130.6751135.89661.82334
NODDeveloping tillers at six leaf stage, 3rd internode3.999192.443975.239449.10968
CAR5Developing grain, bracts removed (5 DPA)12.248310.558710.443812.9101
CAR15Developing grain, bracts removed (15 DPA)5.031642.454323.572449.99244



CDS Structure of MLOC_25628






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25628.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_25628.1CUST_3711_PI427708083AvailableAvailablecontig_170373 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g01070.1 +1 1e-35 130 64/97 (66%) 13102.m00011 protein FG-GAP repeat-containing protein, putative, expressed
TAIR PP10 AT3G51050.1 +1 2e-31 117 58/97 (60%) FG-GAP repeat-containing protein | chr3:18954023-18957698 FORWARD LENGTH=698