MLOC_25561 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains195.584226.515221.33235.213
LEAShoots from the seedlings (10 cm shoot stage)82.39935.543620.108440.754
INF1Young developing inflorescences (5mm)99.609584.701994.882288.0123
INF2Developing inflorescences (1-1.5 cm)61.672149.719454.500666.51
ROORoots from the seedlings (10 cm shoot stage)77.0282114.861113.179138.908
NODDeveloping tillers at six leaf stage, 3rd internode173.71787.4996144.442308.23
CAR5Developing grain, bracts removed (5 DPA)128.773116.37130.596137.201
CAR15Developing grain, bracts removed (15 DPA)10.05537.047753.5067119.0859



CDS Structure of MLOC_25561






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25561.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_25561.1NoneAvailableAvailablecontig_169942 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g26850.3 -3 4e-15 71 34/38 (89%) 13111.m02571 protein erythronate-4-phosphate dehydrogenase, putative, expressed
TAIR PP10 AT4G13940.4 -3 6e-29 107 53/59 (90%) | Symbols: HOG1, SAHH1 | S-adenosyl-L-homocysteine hydrolase | chr4:8054931-8056763 FORWARD LENGTH=325