- Predicted Gene MLOC_25540
MLOC_25540 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_25540_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_25540_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.898859 | 1.30941 | 0.905914 | 0.840133 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.4346 | 0.825423 | 0.760393 | 0.756838 |
INF1 | Young developing inflorescences (5mm) | 1.36078 | 1.51582 | 1.42311 | 1.1049 |
INF2 | Developing inflorescences (1-1.5 cm) | 2.70956 | 2.0667 | 2.17083 | 2.10592 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.220416 | 0.654338 | 0.915531 | 0.501868 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.224335 | 0.264395 | 0.251468 | 0.585879 |
CAR5 | Developing grain, bracts removed (5 DPA) | 2.08487 | 1.63704 | 1.22933 | 1.30862 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.08413 | 1.10069 | 0.777249 | 2.07564 |
CDS Structure of MLOC_25540
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_25540.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os06g34830.1 |
+3 |
4e-21 |
94 |
47/54 (87%) |
13106.m03596 protein amino acid permease family protein, putative, expressed |
TAIR PP10 |
AT1G17120.1 |
+3 |
4e-14 |
72 |
35/54 (65%) |
| Symbols: CAT8 | cationic amino acid transporter 8 | chr1:5851964-5853736 FORWARD LENGTH=590 |