MLOC_25540 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8988591.309410.9059140.840133
LEAShoots from the seedlings (10 cm shoot stage)1.43460.8254230.7603930.756838
INF1Young developing inflorescences (5mm)1.360781.515821.423111.1049
INF2Developing inflorescences (1-1.5 cm)2.709562.06672.170832.10592
ROORoots from the seedlings (10 cm shoot stage)0.2204160.6543380.9155310.501868
NODDeveloping tillers at six leaf stage, 3rd internode0.2243350.2643950.2514680.585879
CAR5Developing grain, bracts removed (5 DPA)2.084871.637041.229331.30862
CAR15Developing grain, bracts removed (15 DPA)1.084131.100690.7772492.07564



CDS Structure of MLOC_25540






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25540.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_25540.1NoneAvailableAvailablecontig_169855 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g34830.1 +3 4e-21 94 47/54 (87%) 13106.m03596 protein amino acid permease family protein, putative, expressed
TAIR PP10 AT1G17120.1 +3 4e-14 72 35/54 (65%) | Symbols: CAT8 | cationic amino acid transporter 8 | chr1:5851964-5853736 FORWARD LENGTH=590