MLOC_25513 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains42.514560.849559.32672.9091
LEAShoots from the seedlings (10 cm shoot stage)22.7728.440526.2293215.3555
INF1Young developing inflorescences (5mm)33.713424.610428.704429.6093
INF2Developing inflorescences (1-1.5 cm)12.828712.16096.7676713.7896
ROORoots from the seedlings (10 cm shoot stage)40.92725.363732.658145.4115
NODDeveloping tillers at six leaf stage, 3rd internode45.691410.408418.738953.5111
CAR5Developing grain, bracts removed (5 DPA)26.311223.323128.110832.9337
CAR15Developing grain, bracts removed (15 DPA)1.162071.684922.3015.02083



CDS Structure of MLOC_25513






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25513.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_25513.1NoneAvailableAvailablecontig_1696634 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6None-----
TAIR PP10 AT4G13940.4 +1 2e-24 94 47/56 (84%) | Symbols: HOG1, SAHH1 | S-adenosyl-L-homocysteine hydrolase | chr4:8054931-8056763 FORWARD LENGTH=325