MLOC_25487 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.092794.024985.510744.9646
LEAShoots from the seedlings (10 cm shoot stage)8.2126.204335.123595.78961
INF1Young developing inflorescences (5mm)17.042918.925220.500519.5715
INF2Developing inflorescences (1-1.5 cm)29.637325.105231.591837.3773
ROORoots from the seedlings (10 cm shoot stage)0.9887673.788664.087165.06863
NODDeveloping tillers at six leaf stage, 3rd internode5.283459.445925.5756626.3703
CAR5Developing grain, bracts removed (5 DPA)0.558590.4111510.5994040.617879
CAR15Developing grain, bracts removed (15 DPA)1.799521.39593.790596.22341



CDS Structure of MLOC_25487






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25487.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_25487.2CUST_3684_PI427708083AvailableAvailablecontig_1694647 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g29620.1 -2 3e-46 163 81/110 (74%) 13107.m02977 protein OsSCP39 - Putative Serine Carboxypeptidase homologue, expressed
TAIR PP10 AT3G45010.1 -2 3e-37 137 65/102 (64%) | Symbols: scpl48 | serine carboxypeptidase-like 48 | chr3:16466328-16468845 FORWARD LENGTH=510