- Predicted Gene MLOC_2544
- Gene IDMLOC_2544
- Source Contig contig_1226734
MLOC_2544 FPKM values
FPKM by Treatment | FPKM by Replicate |
---|---|
There are no FPKM-by-treatment values calculated for this gene. | ![]() |
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|---|---|---|---|---|
EMB | 4-day embryos dissected from germinating grains | 10.4714 | 5.55924 | 9.66502 | 0 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 19.2691 | 10.4073 | 7.96284 | 0 |
INF1 | Young developing inflorescences (5mm) | 8.10306 | 17.7332 | 16.4184 | 0 |
INF2 | Developing inflorescences (1-1.5 cm) | 20.4863 | 17.1909 | 21.2063 | 0 |
ROO | Roots from the seedlings (10 cm shoot stage) | 6.24778 | 9.27996 | 15.0268 | 0 |
NOD | Developing tillers at six leaf stage, 3rd internode | 8.58334 | 14.0848 | 15.978 | 0 |
CAR5 | Developing grain, bracts removed (5 DPA) | 12.3109 | 12.4402 | 8.46121 | 0 |
CAR15 | Developing grain, bracts removed (15 DPA) | 9.59712 | 7.42479 | 7.68942 | 0 |
CDS Structure of MLOC_2544
![](/morexGenes/blast_net_images/MLOC_2544_assembly3_WGSMorex_rbca.fasta_genes.png)
Members of Gene Cluster
This cluster has a confidence assignment of High Confidence.The gene has a transcript that is part of a cluster represented by AK249301.1
Cluster member | Probe ID | FPKM by replicate | FPKM by treatment | Source Contig |
---|---|---|---|---|
AK249301.1 | CUST_23254_PI427708080 | None | None | None |
MLOC_13145.1 | None | Available | None | contig_156493 (Mapped) |
MLOC_1912.1 | None | Available | None | contig_1170319 (Not mapped) |
MLOC_2544.1 | None | Available | None | contig_1226734 (Not mapped) |
MLOC_2887.1 | None | Available | None | contig_1257715 (Not mapped) |
MLOC_29047.1 | None | Available | None | contig_1969596 (Not mapped) |
MLOC_30776.1 | None | Available | None | contig_21252 (Not mapped) |
MLOC_33489.1 | None | Available | None | contig_237800 (Not mapped) |
MLOC_35846.1 | None | Available | None | contig_252373 (Mapped) |
MLOC_41311.1 | None | Available | None | contig_2582226 (Not mapped) |
MLOC_42452.1 | None | Available | None | contig_2645397 (Not mapped) |
MLOC_46466.1 | None | Available | None | contig_290832 (Mapped) |
MLOC_47434.1 | None | Available | None | contig_306050 (Mapped) |
MLOC_48547.1 | None | Available | Available | contig_325745 (Not mapped) |
MLOC_59622.1 | None | Available | None | contig_437690 (Mapped) |
MLOC_80103.1 | None | Available | None | contig_886570 (Not mapped) |
MLOC_955.1 | None | Available | None | contig_1079535 (Mapped) |
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|---|---|---|---|---|---|
Rice PP6 | None | - | - | - | - | - |
TAIR PP10 | None | - | - | - | - | - |