MLOC_25400 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.79538201.0812
LEAShoots from the seedlings (10 cm shoot stage)0.7544300.2979340.520463
INF1Young developing inflorescences (5mm)0.8413051.035951.307590.766172
INF2Developing inflorescences (1-1.5 cm)1.291160.147080.4484140.731732
ROORoots from the seedlings (10 cm shoot stage)0.3750070.42429200.703896
NODDeveloping tillers at six leaf stage, 3rd internode0.1907780.3851590.05412571.93194
CAR5Developing grain, bracts removed (5 DPA)0.6153630.1808971.124360.680575
CAR15Developing grain, bracts removed (15 DPA)0.6680750.4598610.6616011.41165



CDS Structure of MLOC_25400






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25400.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_25400.1CUST_3674_PI427708083AvailableAvailablecontig_1689119 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g68810.1 +1 4e-43 154 77/93 (83%) 13101.m07501 protein expressed protein
TAIR PP10 AT1G24706.1 +1 2e-28 111 59/105 (56%) | Symbols: THO2, AtTHO2 | THO2 | chr1:8742210-8755243 FORWARD LENGTH=1804