MLOC_2539 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_2539_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_2539_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 31.339 | 22.5751 | 23.21 | 25.2977 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0.50921 | 0.223105 | 0.143138 | 0.250547 |
INF1 | Young developing inflorescences (5mm) | 0.0323182 | 0 | 0 | 0.029716 |
INF2 | Developing inflorescences (1-1.5 cm) | 0 | 0 | 0 | 0 |
ROO | Roots from the seedlings (10 cm shoot stage) | 21.8222 | 20.6062 | 14.2091 | 23.1918 |
NOD | Developing tillers at six leaf stage, 3rd internode | 11.8562 | 27.5534 | 0.730015 | 59.2606 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0 | 0.074975 | 0 | 0.0975777 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0 | 0 | 0 | 0 |
CDS Structure of MLOC_2539
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_2539.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os08g13920.1 |
+3 |
9e-114 |
339 |
159/250 (64%) |
13108.m01491 protein glycosyl hydrolases family 16, putative, expressed |
TAIR PP10 |
AT5G57550.1 |
+3 |
4e-81 |
254 |
116/235 (49%) |
| Symbols: XTR3, XTH25 | xyloglucan endotransglucosylase/hydrolase 25 | chr5:23305055-23306384 REVERSE LENGTH=284 |