MLOC_2539 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains31.33922.575123.2125.2977
LEAShoots from the seedlings (10 cm shoot stage)0.509210.2231050.1431380.250547
INF1Young developing inflorescences (5mm)0.0323182000.029716
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)21.822220.606214.209123.1918
NODDeveloping tillers at six leaf stage, 3rd internode11.856227.55340.73001559.2606
CAR5Developing grain, bracts removed (5 DPA)00.07497500.0975777
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_2539






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_2539.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_2539.1CUST_10300_PI427708080AvailableAvailablecontig_122663 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g13920.1 +3 9e-114 339 159/250 (64%) 13108.m01491 protein glycosyl hydrolases family 16, putative, expressed
TAIR PP10 AT5G57550.1 +3 4e-81 254 116/235 (49%) | Symbols: XTR3, XTH25 | xyloglucan endotransglucosylase/hydrolase 25 | chr5:23305055-23306384 REVERSE LENGTH=284