MLOC_25299 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains34.028632.732430.345735.2701
LEAShoots from the seedlings (10 cm shoot stage)23.547514.696516.182916.2537
INF1Young developing inflorescences (5mm)50.185547.672748.104542.3608
INF2Developing inflorescences (1-1.5 cm)46.461943.598748.337152.1552
ROORoots from the seedlings (10 cm shoot stage)16.48632.479231.662539.6723
NODDeveloping tillers at six leaf stage, 3rd internode8.173066.8279110.689925.6967
CAR5Developing grain, bracts removed (5 DPA)35.36440.454837.641539.6366
CAR15Developing grain, bracts removed (15 DPA)18.473218.811915.188843.379



CDS Structure of MLOC_25299






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25299.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372666NoneNoneNoneNone
MLOC_25299.1CUST_2051_PI427708080AvailableAvailablecontig_168295 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g10190.1 +1 0.0 761 386/442 (87%) 13103.m01136 protein seryl-tRNA synthetase, putative, expressed
TAIR PP10 AT5G27470.1 +1 0.0 643 318/454 (70%) seryl-tRNA synthetase / serine--tRNA ligase | chr5:9695087-9697154 FORWARD LENGTH=451