MLOC_25218 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains40.371940.122139.689541.5106
LEAShoots from the seedlings (10 cm shoot stage)24.73431.329432.730124.7135
INF1Young developing inflorescences (5mm)63.477165.401261.325157.4039
INF2Developing inflorescences (1-1.5 cm)47.354546.173746.869354.6889
ROORoots from the seedlings (10 cm shoot stage)33.544328.790528.727334.4531
NODDeveloping tillers at six leaf stage, 3rd internode8.0410.499119.774838.3378
CAR5Developing grain, bracts removed (5 DPA)57.862458.705566.529764.0926
CAR15Developing grain, bracts removed (15 DPA)49.324249.720839.7915119.35



CDS Structure of MLOC_25218






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25218.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354360NoneNoneNoneNone
MLOC_25218.1CUST_2050_PI427708080AvailableAvailablecontig_167840 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g22030.1 +3 0.0 837 420/466 (90%) 13112.m02237 protein serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed
TAIR PP10 AT4G13930.1 +3 0.0 752 374/465 (80%) | Symbols: SHM4 | serine hydroxymethyltransferase 4 | chr4:8048013-8050021 REVERSE LENGTH=471