MLOC_25121 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.019616.957516.938812.9193
LEAShoots from the seedlings (10 cm shoot stage)30.840622.896520.690720.1181
INF1Young developing inflorescences (5mm)34.197644.068153.612829.8997
INF2Developing inflorescences (1-1.5 cm)49.465744.335545.546644.4273
ROORoots from the seedlings (10 cm shoot stage)3.5676113.44399.9979712.2928
NODDeveloping tillers at six leaf stage, 3rd internode35.215447.191747.8447163.473
CAR5Developing grain, bracts removed (5 DPA)35.769528.233730.070826.5347
CAR15Developing grain, bracts removed (15 DPA)30.216425.53830.410754.0587



CDS Structure of MLOC_25121






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25121.15
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_25121.15CUST_3631_PI427708083AvailableAvailablecontig_167232 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os09g28770.1 -2 2e-151 275 148/187 (79%) 13109.m02839 protein patatin, putative, expressed
TAIR PP10 AT2G26560.1 -2 2e-98 191 110/176 (63%) | Symbols: PLP2, PLA IIA, PLA2A | phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407