MLOC_25110 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.046070.3558820.5888960.606921
LEAShoots from the seedlings (10 cm shoot stage)4.276815.208969.599945.66531
INF1Young developing inflorescences (5mm)0.2508510.434410.04614190.261208
INF2Developing inflorescences (1-1.5 cm)0.0412036000.0521581
ROORoots from the seedlings (10 cm shoot stage)00.059409900.321759
NODDeveloping tillers at six leaf stage, 3rd internode0.03080510.02002360.0582810.0849412
CAR5Developing grain, bracts removed (5 DPA)0.5670411.126610.8014861.05965
CAR15Developing grain, bracts removed (15 DPA)000.0467060.119567



CDS Structure of MLOC_25110






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25110.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK364243NoneNoneNoneNone
MLOC_25110.2CUST_2048_PI427708080AvailableAvailablecontig_167151 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g50530.1 -1 3e-47 159 78/95 (82%) 13103.m05496 protein expressed protein
TAIR PP10 AT2G01755.1 -1 7e-29 110 54/92 (59%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 120 Blast hits to 120 proteins in 52 species: Archae - 0; Bacteria - 80; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink). | chr2:332249-332770 REVERSE LENGTH=173