MLOC_25056 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.08481610.4354010.4050950.214977
LEAShoots from the seedlings (10 cm shoot stage)0.4135770.08115480.1850070.176968
INF1Young developing inflorescences (5mm)0.9877781.027931.383770.621006
INF2Developing inflorescences (1-1.5 cm)1.069631.053711.096020.844358
ROORoots from the seedlings (10 cm shoot stage)00.04526490.6104080.106926
NODDeveloping tillers at six leaf stage, 3rd internode0.709880.6899230.9617891.82636
CAR5Developing grain, bracts removed (5 DPA)0.4046360.3600550.1540190.221713
CAR15Developing grain, bracts removed (15 DPA)0.05312050.10625800.148175



CDS Structure of MLOC_25056






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_25056.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_25056.2CUST_3616_PI427708083AvailableAvailablecontig_166855 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g49900.1 -1 1e-19 91 46/103 (45%) 13103.m05424 protein zinc finger, C3HC4 type domain containing protein, expressed
TAIR PP10 AT1G18470.1 -1 6e-13 67 40/116 (34%) Transmembrane Fragile-X-F-associated protein | chr1:6356407-6360057 REVERSE LENGTH=467