MLOC_24943 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5844370.3793970.5066790.522757
LEAShoots from the seedlings (10 cm shoot stage)0.2954320.3516370.9144730.471315
INF1Young developing inflorescences (5mm)0.4037870.352360.763680.505259
INF2Developing inflorescences (1-1.5 cm)0.6831381.011011.225451.21732
ROORoots from the seedlings (10 cm shoot stage)0.2692440.3875660.1759370.458095
NODDeveloping tillers at six leaf stage, 3rd internode0.527880.2617480.3966970.807679
CAR5Developing grain, bracts removed (5 DPA)0.851820.4308350.7092910.721773
CAR15Developing grain, bracts removed (15 DPA)0.255290.05865740.1477380.420885



CDS Structure of MLOC_24943






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_24943.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_24943.1CUST_3599_PI427708083AvailableAvailablecontig_166265 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49440.2 +2 4e-92 276 128/177 (72%) 13105.m05291 protein DUF1264 domain containing protein, putative, expressed
TAIR PP10 AT1G05510.1 +2 8e-77 236 107/175 (61%) Protein of unknown function (DUF1264) | chr1:1629527-1630690 FORWARD LENGTH=241