MLOC_24935 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.865277.421288.383216.85899
LEAShoots from the seedlings (10 cm shoot stage)10.58296.174197.810626.30456
INF1Young developing inflorescences (5mm)18.203620.744224.975415.6997
INF2Developing inflorescences (1-1.5 cm)29.812228.651436.6629.8696
ROORoots from the seedlings (10 cm shoot stage)7.7004910.634914.364410.378
NODDeveloping tillers at six leaf stage, 3rd internode1.32881.809945.018356.29594
CAR5Developing grain, bracts removed (5 DPA)25.878526.964623.878621.4219
CAR15Developing grain, bracts removed (15 DPA)15.505514.637414.202831.6026



CDS Structure of MLOC_24935






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_24935.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_24935.1CUST_3595_PI427708083AvailableAvailablecontig_166202 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g50490.1 +1 5e-50 186 85/110 (77%) 13102.m05730 protein endoglucanase, putative, expressed
TAIR PP10 AT2G32990.1 +1 4e-46 173 78/110 (71%) | Symbols: AtGH9B8, GH9B8 | glycosyl hydrolase 9B8 | chr2:14003361-14005844 FORWARD LENGTH=525