MLOC_2492 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.414651.499191.383211.2947
LEAShoots from the seedlings (10 cm shoot stage)0.900250.1279540.05064440.331841
INF1Young developing inflorescences (5mm)5.992128.501328.503455.31959
INF2Developing inflorescences (1-1.5 cm)1.9271.214840.8156261.35769
ROORoots from the seedlings (10 cm shoot stage)0.8804121.460981.720491.463
NODDeveloping tillers at six leaf stage, 3rd internode0.1334570.07615060.1187060.26057
CAR5Developing grain, bracts removed (5 DPA)0.4689490.4553210.4230850.387069
CAR15Developing grain, bracts removed (15 DPA)0.397670.1206330.526710.636682



CDS Structure of MLOC_2492






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_2492.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_2492.1CUST_10260_PI427708080AvailableAvailablecontig_122203 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g11830.1 -2 0.0 586 304/543 (56%) 13106.m01284 protein hAT dimerisation domain-containing protein, putative, expressed
TAIR PP10 AT1G19260.1 -2 2e-124 388 212/543 (39%) TTF-type zinc finger protein with HAT dimerisation domain | chr1:6657260-6659569 REVERSE LENGTH=769