MLOC_2491 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1662670.1420480.2356180.17514
LEAShoots from the seedlings (10 cm shoot stage)0.3469830.1905470.3814050.278927
INF1Young developing inflorescences (5mm)0.2741710.6203540.5357670.406165
INF2Developing inflorescences (1-1.5 cm)0.4951830.4883150.4987620.557206
ROORoots from the seedlings (10 cm shoot stage)0.2978260.1858590.3218090.255276
NODDeveloping tillers at six leaf stage, 3rd internode0.1352650.1212440.1234380.367687
CAR5Developing grain, bracts removed (5 DPA)0.3607150.319560.4267630.359753
CAR15Developing grain, bracts removed (15 DPA)0.1876840.2666470.1924190.516789



CDS Structure of MLOC_2491






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_2491.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_2491.1NoneAvailableAvailablecontig_122203 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g28480.1 -2 5e-44 166 93/161 (58%) 13106.m02937 protein polygalacturonase inhibitor 1 precursor, putative, expressed
TAIR PP10 AT1G33710.1 +2 5e-16 79 48/131 (37%) RNA-directed DNA polymerase (reverse transcriptase)-related family protein | chr1:12219657-12220289 FORWARD LENGTH=210