MLOC_24879 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3695260.5015690.3268570.455211
LEAShoots from the seedlings (10 cm shoot stage)0.3356950.5810610.1781890.295657
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.7189610.3815591.050190.588286
NODDeveloping tillers at six leaf stage, 3rd internode0.2409960.33879700.990904
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0.08204250.048897900.223103



CDS Structure of MLOC_24879






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_24879.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_24879.1NoneAvailableAvailablecontig_165970 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g04300.1 +1 0.0 583 304/449 (68%) 13101.m00388 protein glycosyl hydrolase family 10 protein, putative, expressed
TAIR PP10 AT1G58370.1 +1 2e-121 380 201/441 (46%) | Symbols: RXF12, ATXYN1 | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein | chr1:21684751-21688209 FORWARD LENGTH=917