MLOC_24852 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.885414.473383.322254.04947
LEAShoots from the seedlings (10 cm shoot stage)1.127551.304740.2901080.781045
INF1Young developing inflorescences (5mm)11.532714.217.388889.44238
INF2Developing inflorescences (1-1.5 cm)5.028188.401018.272758.05679
ROORoots from the seedlings (10 cm shoot stage)2.297223.652865.03253.9065
NODDeveloping tillers at six leaf stage, 3rd internode00.07568390.2121280.485839
CAR5Developing grain, bracts removed (5 DPA)7.598574.109855.344845.45702
CAR15Developing grain, bracts removed (15 DPA)0.1540750.8386221.105051.47613



CDS Structure of MLOC_24852






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_24852.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_24852.1CUST_3586_PI427708083AvailableAvailablecontig_165838 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g56130.1 -3 3e-82 246 125/132 (95%) 13102.m06448 protein PCNA - Putative DNA replicative polymerase clamp, expressed
TAIR PP10 AT2G29570.1 -3 5e-79 238 118/132 (89%) | Symbols: PCNA2, ATPCNA2 | proliferating cell nuclear antigen 2 | chr2:12650139-12651598 REVERSE LENGTH=264