MLOC_24786 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)5.359615.087635.67925.34967
CAR15Developing grain, bracts removed (15 DPA)0.4250570.09024460.6308470.824104



CDS Structure of MLOC_24786






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_24786.4
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375056NoneNoneNoneNone
MLOC_24786.4CUST_2047_PI427708080AvailableAvailablecontig_165536 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g15710.1 +2 3e-42 142 75/125 (60%) 13102.m01752 protein plastocyanin-like domain containing protein, putative
TAIR PP10 AT2G02850.1 +2 4e-30 110 51/99 (52%) | Symbols: ARPN | plantacyanin | chr2:826630-827720 REVERSE LENGTH=129