MLOC_2470 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 15.3163 | 17.4203 | 17.9819 | 20.3901 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 22.53 | 21.4336 | 21.0171 | 21.3067 |
| INF1 | Young developing inflorescences (5mm) | 17.455 | 19.0983 | 18.4797 | 18.6079 |
| INF2 | Developing inflorescences (1-1.5 cm) | 22.5604 | 20.6345 | 22.3793 | 28.1535 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 27.8325 | 32.8503 | 37.8027 | 51.2524 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 30.149 | 26.0924 | 26.7434 | 97.8312 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 16.0497 | 18.9893 | 14.7847 | 20.466 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 5.06624 | 4.73492 | 5.18468 | 14.23 |
CDS Structure of MLOC_2470
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_2470.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os08g43480.1 |
+1 |
5e-97 |
298 |
193/301 (64%) |
13108.m04711 protein zinc finger, C3HC4 type family protein, expressed |
| TAIR PP10 |
AT3G19910.1 |
+1 |
8e-67 |
220 |
135/261 (52%) |
RING/U-box superfamily protein | chr3:6926497-6929324 FORWARD LENGTH=340 |
