MLOC_24448 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains176.262156.383175.012179.277
LEAShoots from the seedlings (10 cm shoot stage)52.95849.528415.092620.8397
INF1Young developing inflorescences (5mm)0.6712710.2911880.2120760.450932
INF2Developing inflorescences (1-1.5 cm)0.26480.1713380.5091890.570456
ROORoots from the seedlings (10 cm shoot stage)85.18562.324962.206781.625
NODDeveloping tillers at six leaf stage, 3rd internode251.76488.482726.5962170.362
CAR5Developing grain, bracts removed (5 DPA)108.978106.07109.321125.529
CAR15Developing grain, bracts removed (15 DPA)1.268821.131980.9764933.31474



CDS Structure of MLOC_24448






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_24448.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_24448.1CUST_3509_PI427708083AvailableAvailablecontig_1645095 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g45920.1 +2 7e-75 234 108/118 (92%) 13103.m04936 protein tubulin/FtsZ domain containing protein, putative, expressed
TAIR PP10 AT5G44340.1 +2 2e-71 224 104/118 (88%) | Symbols: TUB4 | tubulin beta chain 4 | chr5:17859442-17860994 REVERSE LENGTH=444