MLOC_24101 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.146310.98512.24449.23272
LEAShoots from the seedlings (10 cm shoot stage)11.72916.129687.544886.446
INF1Young developing inflorescences (5mm)14.278618.426516.469710.987
INF2Developing inflorescences (1-1.5 cm)11.143514.27649.4103111.0096
ROORoots from the seedlings (10 cm shoot stage)8.789847.245079.497017.73417
NODDeveloping tillers at six leaf stage, 3rd internode10.472714.137711.587534.776
CAR5Developing grain, bracts removed (5 DPA)5.680037.512088.20895.63782
CAR15Developing grain, bracts removed (15 DPA)2.544051.447431.458623.85068



CDS Structure of MLOC_24101






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_24101.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_24101.1CUST_11790_PI427708083AvailableAvailablecontig_163670 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g47930.1 +3 2e-45 163 83/93 (89%) 13103.m05168 protein expressed protein
TAIR PP10 AT5G06970.1 +3 5e-33 127 61/85 (72%) Protein of unknown function (DUF810) | chr5:2158431-2166004 REVERSE LENGTH=1101