MLOC_24060 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.214290.4029931.186050.799627
LEAShoots from the seedlings (10 cm shoot stage)1.255951.914490.9260091.15265
INF1Young developing inflorescences (5mm)0.6360220.9286031.138330.762166
INF2Developing inflorescences (1-1.5 cm)0.5557381.12451.167521.07938
ROORoots from the seedlings (10 cm shoot stage)1.337041.081560.7226781.30666
NODDeveloping tillers at six leaf stage, 3rd internode1.175142.297662.26147.36101
CAR5Developing grain, bracts removed (5 DPA)1.452972.84731.780552.02639
CAR15Developing grain, bracts removed (15 DPA)0.5546140.8996090.4939711.74348



CDS Structure of MLOC_24060






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_24060.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_24060.1CUST_11788_PI427708083AvailableAvailablecontig_163578 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g42440.3 -1 5e-19 67 32/42 (76%) 13107.m04434 protein hydroxyacid oxidase 1, putative, expressed
TAIR PP10 AT4G18360.1 -1 2e-15 60 30/37 (81%) Aldolase-type TIM barrel family protein | chr4:10146141-10148386 REVERSE LENGTH=368