MLOC_23953 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.321922.686322.745112.67884
LEAShoots from the seedlings (10 cm shoot stage)2.431522.102382.820191.93489
INF1Young developing inflorescences (5mm)3.486044.230294.069142.78185
INF2Developing inflorescences (1-1.5 cm)3.522993.697033.311233.43792
ROORoots from the seedlings (10 cm shoot stage)3.729122.594343.31393.21436
NODDeveloping tillers at six leaf stage, 3rd internode1.146072.346113.097167.13952
CAR5Developing grain, bracts removed (5 DPA)3.101243.304143.209392.71638
CAR15Developing grain, bracts removed (15 DPA)1.350461.588150.9766742.69862



CDS Structure of MLOC_23953






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_23953.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_23953.1NoneAvailableAvailablecontig_1632865 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g42810.1 +3 2e-19 76 35/63 (56%) 13101.m04406 protein leaf senescence related protein, putative, expressed
TAIR PP10 AT2G38320.1 +3 2e-11 66 30/84 (36%) | Symbols: TBL34 | TRICHOME BIREFRINGENCE-LIKE 34 | chr2:16055488-16057874 FORWARD LENGTH=410