MLOC_23938 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.509619.706855.703568.03289
LEAShoots from the seedlings (10 cm shoot stage)00.8885650.6924690.640839
INF1Young developing inflorescences (5mm)0.0784392000.0729625
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)1.412610.2216580.5468880.533042
NODDeveloping tillers at six leaf stage, 3rd internode0.780430.3623170.3005320.92011
CAR5Developing grain, bracts removed (5 DPA)0000
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_23938






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_23938.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_23938.1CUST_3440_PI427708083AvailableAvailablecontig_163266 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g04540.1 -3 1e-79 250 167/188 (89%) 13108.m00435 protein decarboxylase, putative, expressed
TAIR PP10 AT2G20340.1 -3 9e-32 120 79/172 (46%) Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr2:8779804-8782490 FORWARD LENGTH=490