MLOC_23865 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3206030.1790570.1830630.228049
LEAShoots from the seedlings (10 cm shoot stage)0.21427800.06569730.122551
INF1Young developing inflorescences (5mm)0.6566090.5947940.5569990.58905
INF2Developing inflorescences (1-1.5 cm)0.3607230.5767750.9202620.730731
ROORoots from the seedlings (10 cm shoot stage)1.010640.4431590.3615260.587979
NODDeveloping tillers at six leaf stage, 3rd internode0.6319240.7245671.336042.49429
CAR5Developing grain, bracts removed (5 DPA)0.3718920.2822750.3821980.373659
CAR15Developing grain, bracts removed (15 DPA)0.07340230.1739650.07052530.33124



CDS Structure of MLOC_23865






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_23865.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_23865.1CUST_3434_PI427708083AvailableAvailablecontig_163125 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g58750.1 +3 1e-73 240 124/159 (78%) 13103.m06453 protein protein kinase domain containing protein, expressed
TAIR PP10 AT1G69910.1 +3 1e-46 170 93/165 (56%) Protein kinase superfamily protein | chr1:26330166-26332076 FORWARD LENGTH=636