MLOC_23795 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.195595.092216.644855.62048
LEAShoots from the seedlings (10 cm shoot stage)3.420160.7718361.699851.85929
INF1Young developing inflorescences (5mm)5.697576.537485.58275.0429
INF2Developing inflorescences (1-1.5 cm)4.441117.381355.258396.47071
ROORoots from the seedlings (10 cm shoot stage)4.437726.08116.759067.41333
NODDeveloping tillers at six leaf stage, 3rd internode2.35932.650242.231459.1971
CAR5Developing grain, bracts removed (5 DPA)9.543910.192310.66889.65231
CAR15Developing grain, bracts removed (15 DPA)2.685792.445633.102855.84851



CDS Structure of MLOC_23795






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_23795.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_23795.3CUST_3424_PI427708083AvailableAvailablecontig_162982 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g43220.1 +2 7e-12 62 32/50 (64%) 13101.m04460 protein chitinase domain-containing protein 1 precursor, putative, expressed
TAIR PP10 AT4G01040.1 +2 2e-50 169 77/121 (64%) Glycosyl hydrolase superfamily protein | chr4:453383-455407 FORWARD LENGTH=430