MLOC_23624 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.247376.5238.193334.66927
LEAShoots from the seedlings (10 cm shoot stage)7.142964.638623.739743.74886
INF1Young developing inflorescences (5mm)7.788875.5014811.97155.61225
INF2Developing inflorescences (1-1.5 cm)14.441111.277513.151912.1846
ROORoots from the seedlings (10 cm shoot stage)11.52075.827027.694217.00859
NODDeveloping tillers at six leaf stage, 3rd internode13.936618.895521.482558.4306
CAR5Developing grain, bracts removed (5 DPA)10.59398.9347212.32558.49316
CAR15Developing grain, bracts removed (15 DPA)4.727593.656317.846359.51883



CDS Structure of MLOC_23624






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_23624.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_23624.1CUST_3397_PI427708083AvailableAvailablecontig_16265 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g05280.1 -2 1e-32 122 57/62 (92%) 13105.m00547 protein zinc finger family protein, putative, expressed
TAIR PP10 AT3G47990.1 -2 4e-24 98 46/63 (73%) | Symbols: SIS3 | SUGAR-INSENSITIVE 3 | chr3:17713367-17716051 REVERSE LENGTH=358