MLOC_23576 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.77394.885276.268194.25177
LEAShoots from the seedlings (10 cm shoot stage)9.04188.309479.494966.80367
INF1Young developing inflorescences (5mm)12.990513.150118.651910.4282
INF2Developing inflorescences (1-1.5 cm)17.262518.818322.626918.4469
ROORoots from the seedlings (10 cm shoot stage)5.855468.8778311.96138.92842
NODDeveloping tillers at six leaf stage, 3rd internode17.472616.607222.951146.3615
CAR5Developing grain, bracts removed (5 DPA)10.486110.453913.35149.67988
CAR15Developing grain, bracts removed (15 DPA)8.133176.175136.6226114.8475



CDS Structure of MLOC_23576






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_23576.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_23576.1CUST_10152_PI427708080AvailableAvailablecontig_1625721 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g72880.1 +3 7e-14 72 34/45 (76%) 13101.m07948 protein DNA mismatch repair protein Mlh1, putative, expressed
TAIR PP10 AT4G09140.1 +3 8e-15 74 37/45 (82%) | Symbols: ATMLH1, MLH1 | MUTL-homologue 1 | chr4:5817107-5821035 REVERSE LENGTH=737