MLOC_23565 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.1277212.032311.12598.49837
LEAShoots from the seedlings (10 cm shoot stage)12.258212.12517.37778.24888
INF1Young developing inflorescences (5mm)12.137313.256511.12858.79769
INF2Developing inflorescences (1-1.5 cm)13.884310.473710.611211.6591
ROORoots from the seedlings (10 cm shoot stage)4.482016.510037.635836.81094
NODDeveloping tillers at six leaf stage, 3rd internode4.23693.335383.8680610.7404
CAR5Developing grain, bracts removed (5 DPA)10.54357.8838710.25048.14419
CAR15Developing grain, bracts removed (15 DPA)7.3225.5766.8344913.1988



CDS Structure of MLOC_23565






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_23565.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_23565.1CUST_3392_PI427708083AvailableAvailablecontig_1625435 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g41510.1 -3 3e-135 409 195/218 (89%) 13104.m04074 protein serine/threonine-protein kinase GCN2, putative, expressed
TAIR PP10 AT3G59410.1 -3 5e-91 296 146/259 (56%) | Symbols: GCN2 | protein kinase family protein | chr3:21950575-21959151 FORWARD LENGTH=1241