MLOC_23502 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4337450.5604350.2849810.407565
LEAShoots from the seedlings (10 cm shoot stage)0000.337784
INF1Young developing inflorescences (5mm)0.5443250.3654010.459690.457504
INF2Developing inflorescences (1-1.5 cm)0.571530.5302640.1863920.670149
ROORoots from the seedlings (10 cm shoot stage)00.189200.285781
NODDeveloping tillers at six leaf stage, 3rd internode0.1670980.3155650.1984850.873784
CAR5Developing grain, bracts removed (5 DPA)0.1784310.31868500.198302
CAR15Developing grain, bracts removed (15 DPA)00.36852300.386021



CDS Structure of MLOC_23502






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_23502.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_23502.1CUST_3381_PI427708083AvailableAvailablecontig_1624127 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g07614.1 +2 9e-19 84 38/58 (66%) 13110.m07682 protein retrotransposon protein, putative, unclassified
TAIR PP10None-----