MLOC_23322 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains30.412826.432624.986917.2037
LEAShoots from the seedlings (10 cm shoot stage)26.835320.821824.371413.3967
INF1Young developing inflorescences (5mm)11.699614.301915.53056.85854
INF2Developing inflorescences (1-1.5 cm)14.55719.887258.8378.70096
ROORoots from the seedlings (10 cm shoot stage)45.178324.791633.527922.2162
NODDeveloping tillers at six leaf stage, 3rd internode23.17227.481936.273956.3431
CAR5Developing grain, bracts removed (5 DPA)10.641311.841712.03636.99952
CAR15Developing grain, bracts removed (15 DPA)5.506664.379563.921797.03822



CDS Structure of MLOC_23322






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_23322.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_23322.1NoneAvailableAvailablecontig_1620819 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g24580.1 +2 2e-27 107 51/55 (93%) 13103.m02900 protein transmembrane protein 85, putative, expressed
TAIR PP10 AT5G10780.2 +2 4e-20 86 39/56 (70%) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 395 Blast hits to 395 proteins in 185 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 122; Plants - 51; Viruses - 0; Other Eukaryotes - 83 (source: NCBI BLink). | chr5:3408422-3409784 FORWARD LENGTH=187