MLOC_23271 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1293880.058632300.100974
LEAShoots from the seedlings (10 cm shoot stage)00.05520130.1337270.095651
INF1Young developing inflorescences (5mm)0.08949980.0300140.07396790.0493821
INF2Developing inflorescences (1-1.5 cm)0.07483410.09211540.2042210.111036
ROORoots from the seedlings (10 cm shoot stage)00.031391900.129255
NODDeveloping tillers at six leaf stage, 3rd internode0.3465030.459333.601112.96601
CAR5Developing grain, bracts removed (5 DPA)0.4153190.2427620.5671450.341497
CAR15Developing grain, bracts removed (15 DPA)0.1663160.06815630.3902530.34956



CDS Structure of MLOC_23271






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_23271.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_23271.1CUST_10130_PI427708080AvailableAvailablecontig_161999 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g46892.1 -2 2e-179 521 288/425 (68%) 13104.m04737 protein WD domain, G-beta repeat domain containing protein, expressed
TAIR PP10 AT2G45540.1 -2 9e-122 403 233/447 (52%) WD-40 repeat family protein / beige-related | chr2:18757881-18772229 REVERSE LENGTH=2946