MLOC_23239 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.430216.636625.631033.5069
LEAShoots from the seedlings (10 cm shoot stage)8.149355.392367.355954.01949
INF1Young developing inflorescences (5mm)16.772923.029425.397610.1149
INF2Developing inflorescences (1-1.5 cm)28.213522.533321.113818.1144
ROORoots from the seedlings (10 cm shoot stage)2.370525.231693.469923.17411
NODDeveloping tillers at six leaf stage, 3rd internode2.537065.1440111.818913.9816
CAR5Developing grain, bracts removed (5 DPA)5.456224.941664.798293.06875
CAR15Developing grain, bracts removed (15 DPA)6.404364.894766.309188.04186



CDS Structure of MLOC_23239






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_23239.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_23239.1CUST_11767_PI427708083AvailableAvailablecontig_161962 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g44180.1 +3 5e-28 115 55/65 (85%) 13108.m04790 protein expressed protein
TAIR PP10 AT5G57880.1 +3 9e-15 76 34/55 (62%) | Symbols: MPS1, ATPRD2, PRD2 | multipolar spindle 1 | chr5:23443977-23446439 FORWARD LENGTH=385