MLOC_23053 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains47.296552.378758.284167.8185
LEAShoots from the seedlings (10 cm shoot stage)21.37157.876310.250413.1027
INF1Young developing inflorescences (5mm)32.37228.855827.168330.6995
INF2Developing inflorescences (1-1.5 cm)18.824718.132218.132225.0138
ROORoots from the seedlings (10 cm shoot stage)35.840130.591129.780544.454
NODDeveloping tillers at six leaf stage, 3rd internode43.706631.133.2492120.246
CAR5Developing grain, bracts removed (5 DPA)51.744948.459749.561363.2054
CAR15Developing grain, bracts removed (15 DPA)3.884042.750133.9141710.606



CDS Structure of MLOC_23053






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_23053.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_23053.1NoneAvailableAvailablecontig_1616491 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g26850.2 +1 4e-73 129 57/68 (84%) 13111.m02570 protein erythronate-4-phosphate dehydrogenase, putative, expressed
TAIR PP10 AT4G13940.1 +1 7e-86 127 56/68 (82%) | Symbols: HOG1, EMB1395, SAHH1, MEE58, ATSAHH1 | S-adenosyl-L-homocysteine hydrolase | chr4:8054931-8056676 FORWARD LENGTH=485