MLOC_23039 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains238.327260.922276.48236.353
LEAShoots from the seedlings (10 cm shoot stage)255.357231.099199.573170.221
INF1Young developing inflorescences (5mm)0.6222640.07042110.2334110.265197
INF2Developing inflorescences (1-1.5 cm)0.06179220.3005740.1500850.195889
ROORoots from the seedlings (10 cm shoot stage)1011.33673.858931.328759.348
NODDeveloping tillers at six leaf stage, 3rd internode244.304139.409315.555390.861
CAR5Developing grain, bracts removed (5 DPA)30.241237.173831.721330.4549
CAR15Developing grain, bracts removed (15 DPA)12.415510.78058.7533825.4955



CDS Structure of MLOC_23039






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_23039.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_23039.1CUST_11762_PI427708083AvailableAvailablecontig_1616200 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g41860.4 -2 3e-41 144 79/94 (84%) 13102.m04626 protein aquaporin protein, putative, expressed
TAIR PP10 AT2G37180.1 -2 5e-32 121 65/93 (70%) | Symbols: RD28, PIP2;3, PIP2C | Aquaporin-like superfamily protein | chr2:15617779-15618937 FORWARD LENGTH=285