MLOC_23015 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains29.379837.298743.692526.952
LEAShoots from the seedlings (10 cm shoot stage)13.704427.907515.793711.4881
INF1Young developing inflorescences (5mm)11.369311.1089.88177.58908
INF2Developing inflorescences (1-1.5 cm)6.144129.179868.025276.95384
ROORoots from the seedlings (10 cm shoot stage)46.508133.624974.264133.7146
NODDeveloping tillers at six leaf stage, 3rd internode20.127720.247433.324546.1377
CAR5Developing grain, bracts removed (5 DPA)15.297719.184615.373512.8874
CAR15Developing grain, bracts removed (15 DPA)19.795617.544617.841136.5412



CDS Structure of MLOC_23015






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_23015.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_23015.1CUST_11761_PI427708083AvailableAvailablecontig_1615760 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g53230.1 +2 1e-42 154 76/93 (82%) 13103.m05811 protein bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed
TAIR PP10 AT4G14680.1 +2 1e-29 116 58/92 (63%) | Symbols: APS3 | Pseudouridine synthase/archaeosine transglycosylase-like family protein | chr4:8413443-8415311 REVERSE LENGTH=465