- Predicted Gene MLOC_22893
MLOC_22893 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_22893_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_22893_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0 | 0 | 0.145167 | 0.111473 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 0 | 0 | 0 | 0 |
INF1 | Young developing inflorescences (5mm) | 0.168067 | 0.292298 | 0.316999 | 0.240607 |
INF2 | Developing inflorescences (1-1.5 cm) | 0.945689 | 0.403366 | 0.782272 | 0.805077 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0 | 0 | 0 | 0 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0 | 0 | 0 | 0 |
CAR5 | Developing grain, bracts removed (5 DPA) | 0.0974003 | 0 | 0.293815 | 0.254128 |
CAR15 | Developing grain, bracts removed (15 DPA) | 0 | 0.169705 | 0 | 0.626314 |
CDS Structure of MLOC_22893
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_22893.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g37710.1 |
-3 |
1e-30 |
114 |
54/68 (79%) |
13104.m03608 protein serine hydrolase domain containing protein, expressed |
TAIR PP10 |
AT4G24380.2 |
-3 |
2e-21 |
88 |
43/68 (63%) |
CONTAINS InterPro DOMAIN/s: Serine hydrolase (InterPro:IPR005645); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G65400.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr4:12612554-12613310 FORWARD LENGTH=171 |