MLOC_22799 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains11.691819.658718.773116
LEAShoots from the seedlings (10 cm shoot stage)30.307626.795122.011520.3663
INF1Young developing inflorescences (5mm)26.646431.593444.014626.3769
INF2Developing inflorescences (1-1.5 cm)56.169154.186363.330157.764
ROORoots from the seedlings (10 cm shoot stage)14.377119.331426.750920.3143
NODDeveloping tillers at six leaf stage, 3rd internode29.406824.799135.872378.6811
CAR5Developing grain, bracts removed (5 DPA)47.340844.370745.214340.866
CAR15Developing grain, bracts removed (15 DPA)29.434826.125728.859261.944



CDS Structure of MLOC_22799






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22799.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK373073NoneNoneNoneNone
MLOC_22799.2CUST_166_PI427708083AvailableAvailablecontig_161206 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g37890.1 -2 9e-78 243 117/136 (86%) 13111.m03714 protein NAD dependent epimerase/dehydratase family protein, putative, expressed
TAIR PP10 AT5G28840.2 -2 6e-69 233 111/137 (81%) | Symbols: GME | GDP-D-mannose 3,5-epimerase | chr5:10862472-10864024 REVERSE LENGTH=377