MLOC_2275 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.06482140.242190.3402650.214818
LEAShoots from the seedlings (10 cm shoot stage)0.8076770.9325871.032330.784546
INF1Young developing inflorescences (5mm)0.3368210.3423240.4778760.313599
INF2Developing inflorescences (1-1.5 cm)0.9306011.141431.073991.13137
ROORoots from the seedlings (10 cm shoot stage)0.08703580.1439860.3308910.186313
NODDeveloping tillers at six leaf stage, 3rd internode0.1622050.5809960.2858091.60227
CAR5Developing grain, bracts removed (5 DPA)0.8449040.6473380.6182870.672305
CAR15Developing grain, bracts removed (15 DPA)0.4785610.3899690.3704150.976182



CDS Structure of MLOC_2275






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_2275.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_2275.1CUST_10091_PI427708080AvailableAvailablecontig_120277 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g43040.1 +3 0.0 724 371/721 (51%) 13103.m04629 protein retrotransposon protein, putative, unclassified
TAIR PP10 AT5G03880.1 -1 3e-28 119 65/92 (71%) Thioredoxin family protein | chr5:1038674-1041453 REVERSE LENGTH=339