MLOC_22724 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains9.695218.060157.694175.6518
LEAShoots from the seedlings (10 cm shoot stage)7.343788.100229.778324.73787
INF1Young developing inflorescences (5mm)3.244194.494725.741692.20644
INF2Developing inflorescences (1-1.5 cm)2.896153.378494.479812.54194
ROORoots from the seedlings (10 cm shoot stage)11.829711.47126.126148.68715
NODDeveloping tillers at six leaf stage, 3rd internode9.684668.315910.372819.8081
CAR5Developing grain, bracts removed (5 DPA)7.306666.016247.00364.30223
CAR15Developing grain, bracts removed (15 DPA)4.898575.082888.008437.69817



CDS Structure of MLOC_22724






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22724.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_22724.1CUST_11754_PI427708083AvailableAvailablecontig_1610934 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g39220.1 +3 4e-23 97 43/48 (90%) 13110.m03590 protein tobamovirus multiplication protein, putative, expressed
TAIR PP10 AT1G14530.2 +3 6e-21 89 39/48 (81%) | Symbols: THH1 | Protein of unknown function (DUF1084) | chr1:4971420-4973597 REVERSE LENGTH=293