MLOC_22626 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.692724.10123.660821.7708
LEAShoots from the seedlings (10 cm shoot stage)33.409357.889674.760946.6806
INF1Young developing inflorescences (5mm)6.462625.579968.723345.74442
INF2Developing inflorescences (1-1.5 cm)9.730646.8260814.556210.2796
ROORoots from the seedlings (10 cm shoot stage)15.443715.60728.345919.8538
NODDeveloping tillers at six leaf stage, 3rd internode14.67616.007428.12459.7033
CAR5Developing grain, bracts removed (5 DPA)9.369158.5238310.14028.84874
CAR15Developing grain, bracts removed (15 DPA)11.327813.609215.176329.8314



CDS Structure of MLOC_22626






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22626.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358694NoneNoneNoneNone
MLOC_22626.1CUST_2015_PI427708080AvailableAvailablecontig_160938 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g08260.4 +3 0.0 737 376/451 (83%) 13112.m00872 protein dehydrogenase E1 component domain containing protein, expressed
TAIR PP10 AT5G09300.2 +3 0.0 581 283/396 (71%) Thiamin diphosphate-binding fold (THDP-binding) superfamily protein | chr5:2884282-2886291 REVERSE LENGTH=401