MLOC_2258 FPKM values
| FPKM by Treatment | FPKM by Replicate |
|---|
| 
|
| Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
|---|
| EMB | 4-day embryos dissected from germinating grains | 4.09994 | 4.39635 | 3.57355 | 2.72607 |
| LEA | Shoots from the seedlings (10 cm shoot stage) | 1.95485 | 1.25402 | 2.03816 | 1.14858 |
| INF1 | Young developing inflorescences (5mm) | 6.41079 | 7.094 | 6.18357 | 5.92608 |
| INF2 | Developing inflorescences (1-1.5 cm) | 5.28182 | 5.61562 | 4.91332 | 6.24628 |
| ROO | Roots from the seedlings (10 cm shoot stage) | 5.17151 | 4.49493 | 3.62317 | 5.40568 |
| NOD | Developing tillers at six leaf stage, 3rd internode | 2.33752 | 3.89072 | 5.33367 | 12.0629 |
| CAR5 | Developing grain, bracts removed (5 DPA) | 3.03112 | 4.93675 | 3.30383 | 3.72301 |
| CAR15 | Developing grain, bracts removed (15 DPA) | 1.86408 | 1.72753 | 1.00742 | 2.85963 |
CDS Structure of MLOC_2258
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_2258.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|
| Rice PP6 |
LOC_Os11g38930.1 |
+2 |
5e-113 |
338 |
180/238 (76%) |
13111.m03830 protein tRNA-splicing endonuclease subunit Sen2, putative, expressed |
| TAIR PP10 |
AT5G60230.2 |
+2 |
2e-56 |
189 |
113/240 (47%) |
| Symbols: SEN2, ATSEN2 | splicing endonuclease 2 | chr5:24250185-24250952 REVERSE LENGTH=255 |
