MLOC_22579 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.552421.309791.79671.69751
LEAShoots from the seedlings (10 cm shoot stage)0.3838120.6591020.339030.397944
INF1Young developing inflorescences (5mm)0.018517000.0164959
INF2Developing inflorescences (1-1.5 cm)0.04084980.0783960.02370670.0759647
ROORoots from the seedlings (10 cm shoot stage)1.530880.6459391.116771.02087
NODDeveloping tillers at six leaf stage, 3rd internode0.1631160.2165630.4482530.791182
CAR5Developing grain, bracts removed (5 DPA)2.56742.737042.418583.13847
CAR15Developing grain, bracts removed (15 DPA)1.698211.824181.64474.98441



CDS Structure of MLOC_22579






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22579.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK368483NoneNoneNoneNone
MLOC_22579.1CUST_2013_PI427708080AvailableAvailablecontig_160879 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g39950.1 +2 8e-62 213 185/406 (46%) 13105.m04212 protein DUF623 domain containing protein, expressed
TAIR PP10 AT1G06920.1 +2 6e-21 94 62/189 (33%) | Symbols: ATOFP4, OFP4 | ovate family protein 4 | chr1:2124854-2125801 REVERSE LENGTH=315