MLOC_22512 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.552652.412122.012922.27657
LEAShoots from the seedlings (10 cm shoot stage)34.233348.937864.280341.3606
INF1Young developing inflorescences (5mm)4.562723.514954.912374.05051
INF2Developing inflorescences (1-1.5 cm)3.790113.484064.558714.92451
ROORoots from the seedlings (10 cm shoot stage)0.469841.301651.436461.53535
NODDeveloping tillers at six leaf stage, 3rd internode36.198839.022282.8972138.051
CAR5Developing grain, bracts removed (5 DPA)10.208313.138610.507513.4288
CAR15Developing grain, bracts removed (15 DPA)0.9734921.644271.32323.77914



CDS Structure of MLOC_22512






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22512.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK370354NoneNoneNoneNone
MLOC_22512.2CUST_2009_PI427708080AvailableAvailablecontig_160786 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g33280.1 +1 2e-147 428 246/300 (82%) 13105.m03439 protein thylakoid lumen protein, putative, expressed
TAIR PP10 AT1G54780.1 +1 3e-116 345 165/200 (83%) | Symbols: TLP18.3 | thylakoid lumen 18.3 kDa protein | chr1:20439533-20440953 FORWARD LENGTH=285