MLOC_22428 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains31.316727.501730.220724.9849
LEAShoots from the seedlings (10 cm shoot stage)24.691925.962332.070120.7583
INF1Young developing inflorescences (5mm)9.572458.240717.370336.15369
INF2Developing inflorescences (1-1.5 cm)6.585688.291059.114597.06749
ROORoots from the seedlings (10 cm shoot stage)29.910727.026323.819227.2576
NODDeveloping tillers at six leaf stage, 3rd internode66.89849.352123.1189129.547
CAR5Developing grain, bracts removed (5 DPA)8.258438.232138.31866.42298
CAR15Developing grain, bracts removed (15 DPA)1.323971.498241.254562.64625



CDS Structure of MLOC_22428






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_22428.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_22428.1CUST_10067_PI427708080AvailableAvailablecontig_1606735 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g56930.1 -3 2e-150 439 239/284 (84%) 13101.m06039 protein eukaryotic aspartyl protease domain containing protein, expressed
TAIR PP10 AT5G22850.1 -3 2e-106 325 176/282 (62%) Eukaryotic aspartyl protease family protein | chr5:7633717-7636298 REVERSE LENGTH=493